Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tldDProtein TldD. (471 aa)    
Predicted Functional Partners:
pmbA
Protein PmbA.
 
 
0.938
ANL58437.1
Protein involved in N-acetyltransferase activity.
       0.775
nagA
N-acetylglucosamine-6-phosphate deacetylase; Protein involved in hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds and N-acetylglucosamine metabolic process.
      
 0.540
ANL58439.1
Invasion associated locus B family protein.
       0.538
bamD
Outer membrane assembly protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
   
 0.451
ANL58436.1
Phosphate transport regulator protein.
  
    0.445
pepN
Protein involved in metallopeptidase activity, zinc ion binding and proteolysis.
     
 0.443
pit
Protein involved in inorganic phosphate transmembrane transporter activity and phosphate ion transport.
       0.442
purB
Adenylosuccinate lyase; Protein involved in catalytic activity and purine ribonucleotide biosynthetic process; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
 
   
 0.407
Your Current Organism:
Rhizobium phaseoli
NCBI taxonomy Id: 396
Other names: ATCC 14482, DSM 30137, IFO 14785, JCM 20683, NBRC 14785, NRRL L-321, R. phaseoli
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