Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ANL58042.1 | ANL58508.1 | AMC85_CH00616 | AMC85_CH01090 | DNA helicase UvrD-like protein; Protein involved in hydrolase activity and ATP binding. | DEAD/DEAH box type DNA/RNA helicase protein; Protein involved in nucleic acid binding, ATP binding, ATP-dependent helicase activity and DNA recombination. | 0.679 |
| ANL58042.1 | ANL58581.1 | AMC85_CH00616 | AMC85_CH01164 | DNA helicase UvrD-like protein; Protein involved in hydrolase activity and ATP binding. | Adenylate cyclase family 3 protein; Protein involved in binding, cyclic nucleotide biosynthetic process and intracellular signal transduction. | 0.451 |
| ANL58042.1 | dnaN | AMC85_CH00616 | AMC85_CH00356 | DNA helicase UvrD-like protein; Protein involved in hydrolase activity and ATP binding. | DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.778 |
| ANL58042.1 | mutL | AMC85_CH00616 | AMC85_CH00916 | DNA helicase UvrD-like protein; Protein involved in hydrolase activity and ATP binding. | DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | 0.712 |
| ANL58042.1 | polA | AMC85_CH00616 | AMC85_CH00194 | DNA helicase UvrD-like protein; Protein involved in hydrolase activity and ATP binding. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.649 |
| ANL58042.1 | recA | AMC85_CH00616 | AMC85_CH02417 | DNA helicase UvrD-like protein; Protein involved in hydrolase activity and ATP binding. | Recombinase A; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.868 |
| ANL58042.1 | topA | AMC85_CH00616 | AMC85_CH01707 | DNA helicase UvrD-like protein; Protein involved in hydrolase activity and ATP binding. | DNA topoisomerase 1; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.629 |
| ANL58042.1 | uvrD | AMC85_CH00616 | AMC85_CH02944 | DNA helicase UvrD-like protein; Protein involved in hydrolase activity and ATP binding. | DNA helicase II; Protein involved in hydrolase activity and ATP binding. | 0.905 |
| ANL58255.1 | ANL58508.1 | AMC85_CH00833 | AMC85_CH01090 | DNA helicase UvrD-like protein; Protein involved in hydrolase activity and ATP binding. | DEAD/DEAH box type DNA/RNA helicase protein; Protein involved in nucleic acid binding, ATP binding, ATP-dependent helicase activity and DNA recombination. | 0.679 |
| ANL58255.1 | ANL58581.1 | AMC85_CH00833 | AMC85_CH01164 | DNA helicase UvrD-like protein; Protein involved in hydrolase activity and ATP binding. | Adenylate cyclase family 3 protein; Protein involved in binding, cyclic nucleotide biosynthetic process and intracellular signal transduction. | 0.451 |
| ANL58255.1 | dnaN | AMC85_CH00833 | AMC85_CH00356 | DNA helicase UvrD-like protein; Protein involved in hydrolase activity and ATP binding. | DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.778 |
| ANL58255.1 | mutL | AMC85_CH00833 | AMC85_CH00916 | DNA helicase UvrD-like protein; Protein involved in hydrolase activity and ATP binding. | DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | 0.712 |
| ANL58255.1 | polA | AMC85_CH00833 | AMC85_CH00194 | DNA helicase UvrD-like protein; Protein involved in hydrolase activity and ATP binding. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.696 |
| ANL58255.1 | recA | AMC85_CH00833 | AMC85_CH02417 | DNA helicase UvrD-like protein; Protein involved in hydrolase activity and ATP binding. | Recombinase A; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.890 |
| ANL58255.1 | topA | AMC85_CH00833 | AMC85_CH01707 | DNA helicase UvrD-like protein; Protein involved in hydrolase activity and ATP binding. | DNA topoisomerase 1; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.683 |
| ANL58508.1 | ANL58042.1 | AMC85_CH01090 | AMC85_CH00616 | DEAD/DEAH box type DNA/RNA helicase protein; Protein involved in nucleic acid binding, ATP binding, ATP-dependent helicase activity and DNA recombination. | DNA helicase UvrD-like protein; Protein involved in hydrolase activity and ATP binding. | 0.679 |
| ANL58508.1 | ANL58255.1 | AMC85_CH01090 | AMC85_CH00833 | DEAD/DEAH box type DNA/RNA helicase protein; Protein involved in nucleic acid binding, ATP binding, ATP-dependent helicase activity and DNA recombination. | DNA helicase UvrD-like protein; Protein involved in hydrolase activity and ATP binding. | 0.679 |
| ANL58508.1 | ANL58581.1 | AMC85_CH01090 | AMC85_CH01164 | DEAD/DEAH box type DNA/RNA helicase protein; Protein involved in nucleic acid binding, ATP binding, ATP-dependent helicase activity and DNA recombination. | Adenylate cyclase family 3 protein; Protein involved in binding, cyclic nucleotide biosynthetic process and intracellular signal transduction. | 0.759 |
| ANL58508.1 | dnaN | AMC85_CH01090 | AMC85_CH00356 | DEAD/DEAH box type DNA/RNA helicase protein; Protein involved in nucleic acid binding, ATP binding, ATP-dependent helicase activity and DNA recombination. | DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.660 |
| ANL58508.1 | mutL | AMC85_CH01090 | AMC85_CH00916 | DEAD/DEAH box type DNA/RNA helicase protein; Protein involved in nucleic acid binding, ATP binding, ATP-dependent helicase activity and DNA recombination. | DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | 0.887 |
page 1 of 5