Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ANL58853.1NYN domain-containing LabA-like protein. (193 aa)    
Predicted Functional Partners:
ANL58731.1
Pentapeptide repeat-containing protein.
      
 0.798
trmB
tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
  
  
 0.724
ANL61318.1
Protein involved in methyltransferase activity and metabolic process.
  
     0.580
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
   
   0.565
ANL58926.1
DNA polymerase III chi subunit HolC protein; Protein involved in DNA binding, DNA-directed DNA polymerase activity and DNA replication.
  
     0.548
ANL58873.1
Metal-dependent phosphohydrolase HD domain-containing protein.
 
     0.456
ANL57623.1
XRE family transcriptional regulator protein; Protein involved in DNA binding.
  
     0.454
relA
GTP pyrophosphokinase; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.
       0.443
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
 
     0.442
ANL58979.1
MarR family transcriptional regulator protein; Protein involved in sequence-specific DNA binding transcription factor activity and regulation of transcription, DNA-dependent.
  
     0.429
Your Current Organism:
Rhizobium phaseoli
NCBI taxonomy Id: 396
Other names: ATCC 14482, DSM 30137, IFO 14785, JCM 20683, NBRC 14785, NRRL L-321, R. phaseoli
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