Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ANL58529.1 | ANL60413.1 | AMC85_CH01111 | AMC85_CH03059 | DEAD/DEAH box type DNA/RNA helicase protein; Protein involved in nucleic acid binding, ATP binding and ATP-dependent helicase activity. | ATP-dependent RNA helicase YejH protein; Protein involved in catalytic activity, ATP binding and hydrolase activity. | 0.401 |
| ANL58529.1 | rpoA | AMC85_CH01111 | AMC85_CH01776 | DEAD/DEAH box type DNA/RNA helicase protein; Protein involved in nucleic acid binding, ATP binding and ATP-dependent helicase activity. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.966 |
| ANL58529.1 | rpoB | AMC85_CH01111 | AMC85_CH01741 | DEAD/DEAH box type DNA/RNA helicase protein; Protein involved in nucleic acid binding, ATP binding and ATP-dependent helicase activity. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.958 |
| ANL58529.1 | rpoC | AMC85_CH01111 | AMC85_CH01742 | DEAD/DEAH box type DNA/RNA helicase protein; Protein involved in nucleic acid binding, ATP binding and ATP-dependent helicase activity. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.798 |
| ANL58529.1 | rpoZ | AMC85_CH01111 | AMC85_CH01443 | DEAD/DEAH box type DNA/RNA helicase protein; Protein involved in nucleic acid binding, ATP binding and ATP-dependent helicase activity. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.962 |
| ANL60413.1 | ANL58529.1 | AMC85_CH03059 | AMC85_CH01111 | ATP-dependent RNA helicase YejH protein; Protein involved in catalytic activity, ATP binding and hydrolase activity. | DEAD/DEAH box type DNA/RNA helicase protein; Protein involved in nucleic acid binding, ATP binding and ATP-dependent helicase activity. | 0.401 |
| ANL60413.1 | rplF | AMC85_CH03059 | AMC85_CH01765 | ATP-dependent RNA helicase YejH protein; Protein involved in catalytic activity, ATP binding and hydrolase activity. | 50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | 0.413 |
| ANL60413.1 | rpoA | AMC85_CH03059 | AMC85_CH01776 | ATP-dependent RNA helicase YejH protein; Protein involved in catalytic activity, ATP binding and hydrolase activity. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.966 |
| ANL60413.1 | rpoB | AMC85_CH03059 | AMC85_CH01741 | ATP-dependent RNA helicase YejH protein; Protein involved in catalytic activity, ATP binding and hydrolase activity. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.959 |
| ANL60413.1 | rpoC | AMC85_CH03059 | AMC85_CH01742 | ATP-dependent RNA helicase YejH protein; Protein involved in catalytic activity, ATP binding and hydrolase activity. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.839 |
| ANL60413.1 | rpoZ | AMC85_CH03059 | AMC85_CH01443 | ATP-dependent RNA helicase YejH protein; Protein involved in catalytic activity, ATP binding and hydrolase activity. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.964 |
| greA | nusA | AMC85_CH03126 | AMC85_CH00156 | Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides. | Transcription elongation factor NusA; Participates in both transcription termination and antitermination. | 0.570 |
| greA | rpoA | AMC85_CH03126 | AMC85_CH01776 | Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.971 |
| greA | rpoB | AMC85_CH03126 | AMC85_CH01741 | Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.965 |
| greA | rpoC | AMC85_CH03126 | AMC85_CH01742 | Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.982 |
| greA | rpoZ | AMC85_CH03126 | AMC85_CH01443 | Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.964 |
| greA | rpsB | AMC85_CH03126 | AMC85_CH02034 | Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides. | 30S ribosomal protein S2; Protein involved in structural constituent of ribosome and translation; Belongs to the universal ribosomal protein uS2 family. | 0.422 |
| greA | sigA | AMC85_CH03126 | AMC85_CH03106 | Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides. | RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | 0.653 |
| nusA | greA | AMC85_CH00156 | AMC85_CH03126 | Transcription elongation factor NusA; Participates in both transcription termination and antitermination. | Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides. | 0.570 |
| nusA | rplF | AMC85_CH00156 | AMC85_CH01765 | Transcription elongation factor NusA; Participates in both transcription termination and antitermination. | 50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | 0.967 |
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