ANL58875.1 protein (Rhizobium phaseoli) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ANL58875.1

Hypothetical protein. (250 aa)

Predicted Functional Partners:

ANL58876.1

0.879

ANL60283.1

0.749

ANL60523.1

0.737

ANL59654.1

0.730

ANL61476.1

0.717

ANL58872.1

0.711

ANL57505.1

0.705

ANL59834.1

0.688

ANL59547.1

0.679

ANL58755.1

0.659

Your Current Organism:

Rhizobium phaseoli

NCBI taxonomy Id: 396
Other names: ATCC 14482, DSM 30137, IFO 14785, JCM 20683, NBRC 14785, NRRL L-321, R. phaseoli

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ANL57505.1	ANL58755.1	AMC85_CH00053	AMC85_CH01342	Hypothetical protein.	Peptidoglycan-binding domain-containing protein; Protein involved in metabolic process.	0.428
ANL57505.1	ANL58875.1	AMC85_CH00053	AMC85_CH01464	Hypothetical protein.	Hypothetical protein.	0.705
ANL57505.1	ANL59834.1	AMC85_CH00053	AMC85_CH02466	Hypothetical protein.	Hypothetical protein.	0.509
ANL57505.1	ANL60283.1	AMC85_CH00053	AMC85_CH02923	Hypothetical protein.	AsmA family outer membrane protein.	0.638
ANL57505.1	ANL60523.1	AMC85_CH00053	AMC85_CH03171	Hypothetical protein.	Hypothetical protein.	0.727
ANL57505.1	ANL61476.1	AMC85_CH00053	AMC85_CH04154	Hypothetical protein.	Outer membrane lipoprotein; Protein involved in endopeptidase inhibitor activity.	0.660
ANL58755.1	ANL57505.1	AMC85_CH01342	AMC85_CH00053	Peptidoglycan-binding domain-containing protein; Protein involved in metabolic process.	Hypothetical protein.	0.428
ANL58755.1	ANL58875.1	AMC85_CH01342	AMC85_CH01464	Peptidoglycan-binding domain-containing protein; Protein involved in metabolic process.	Hypothetical protein.	0.659
ANL58755.1	ANL58876.1	AMC85_CH01342	AMC85_CH01465	Peptidoglycan-binding domain-containing protein; Protein involved in metabolic process.	Hypothetical protein.	0.674
ANL58755.1	ANL59547.1	AMC85_CH01342	AMC85_CH02171	Peptidoglycan-binding domain-containing protein; Protein involved in metabolic process.	Invasion associated locus B family protein.	0.632
ANL58755.1	ANL59654.1	AMC85_CH01342	AMC85_CH02279	Peptidoglycan-binding domain-containing protein; Protein involved in metabolic process.	Hypothetical protein.	0.654
ANL58755.1	ANL59834.1	AMC85_CH01342	AMC85_CH02466	Peptidoglycan-binding domain-containing protein; Protein involved in metabolic process.	Hypothetical protein.	0.760
ANL58755.1	ANL60283.1	AMC85_CH01342	AMC85_CH02923	Peptidoglycan-binding domain-containing protein; Protein involved in metabolic process.	AsmA family outer membrane protein.	0.760
ANL58755.1	ANL60523.1	AMC85_CH01342	AMC85_CH03171	Peptidoglycan-binding domain-containing protein; Protein involved in metabolic process.	Hypothetical protein.	0.684
ANL58755.1	ANL61476.1	AMC85_CH01342	AMC85_CH04154	Peptidoglycan-binding domain-containing protein; Protein involved in metabolic process.	Outer membrane lipoprotein; Protein involved in endopeptidase inhibitor activity.	0.572
ANL58872.1	ANL58875.1	AMC85_CH01461	AMC85_CH01464	Tyrosine phosphatase family protein.	Hypothetical protein.	0.711
ANL58872.1	ANL58876.1	AMC85_CH01461	AMC85_CH01465	Tyrosine phosphatase family protein.	Hypothetical protein.	0.564
ANL58872.1	ANL59654.1	AMC85_CH01461	AMC85_CH02279	Tyrosine phosphatase family protein.	Hypothetical protein.	0.510
ANL58872.1	ANL60523.1	AMC85_CH01461	AMC85_CH03171	Tyrosine phosphatase family protein.	Hypothetical protein.	0.617
ANL58875.1	ANL57505.1	AMC85_CH01464	AMC85_CH00053	Hypothetical protein.	Hypothetical protein.	0.705