STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
speB-1Agmatinase 1; Protein involved in hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines and metal ion binding; Belongs to the arginase family. (320 aa)    
Predicted Functional Partners:
ANL58815.1
Aminotransferase family protein; Protein involved in catalytic activity and pyridoxal phosphate binding; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 
  0.944
ANL61145.1
ornithine/DAP/Arg decarboxylase protein; Protein involved in catalytic activity and polyamine biosynthetic process; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
  
 
 0.920
speF
Ornithine decarboxylase; Protein involved in catalytic activity, pyridoxal phosphate binding and cellular amino acid metabolic process.
    
 0.913
ANL57567.1
Lysine decarboxylase protein; Protein involved in catalytic activity, pyridoxal phosphate binding and cellular amino acid metabolic process.
    
 0.913
argC
N-acetyl-gamma-glutamyl-phosphate reductase; Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde. Belongs to the NAGSA dehydrogenase family. Type 2 subfamily.
     
 0.683
ANL57823.1
Phenylalanine/histidine ammonia-lyase protein; Protein involved in catalytic activity and biosynthetic process.
  
  
 0.642
ordL
FAD dependent oxidoreductase; Protein involved in oxidoreductase activity and oxidation-reduction process.
 
  
 0.608
ANL59035.1
TauE/SafE family permease protein.
       0.603
soxA-1
Sarcosine oxidase alpha subunit SoxA 1; Protein involved in nucleotide binding and oxidation-reduction process.
 
  
 0.554
rpsI
30S ribosomal protein S9; Protein involved in structural constituent of ribosome and translation; Belongs to the universal ribosomal protein uS9 family.
  
    0.551
Your Current Organism:
Rhizobium phaseoli
NCBI taxonomy Id: 396
Other names: ATCC 14482, DSM 30137, IFO 14785, JCM 20683, NBRC 14785, NRRL L-321, R. phaseoli
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.