STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ANL59305.1Peptidase M23 family protein; Protein involved in cell wall macromolecule catabolic process. (529 aa)    
Predicted Functional Partners:
surE-1
5'-nucleotidase SurE 1; Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates; Belongs to the SurE nucleotidase family.
 
  
 0.663
ANL57627.1
Penicillin binding protein 1A; Protein involved in peptidase activity, transferase activity, transferring pentosyl groups, peptidoglycan biosynthetic process and response to antibiotic.
  
   
 0.614
pcm
Protein involved in protein-L-isoaspartate (D-aspartate) O-methyltransferase activity and protein modification process.
     
 0.614
mrcA
Penicillin-binding protein 1A; Protein involved in peptidase activity, transferase activity, transferring pentosyl groups, peptidoglycan biosynthetic process and response to antibiotic.
 
   
 0.589
ANL58762.1
Penicillin binding protein 1A; Protein involved in peptidase activity, transferase activity, transferring pentosyl groups, peptidoglycan biosynthetic process and response to antibiotic.
  
   
 0.586
hfq
RNA-binding protein Hfq; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family.
 
    0.565
lepB
Signal peptidase I; Protein involved in serine-type peptidase activity and proteolysis; Belongs to the peptidase S26 family.
 
  
 0.559
ANL58606.1
Penicillin binding protein 1A; Protein involved in peptidase activity, transferase activity, transferring pentosyl groups, peptidoglycan biosynthetic process and response to antibiotic.
  
   
 0.536
serS
seryl-tRNA synthetase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec).
       0.531
rpoN-1
RNA polymerase sigma-54 factor RpoN 1; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
    0.503
Your Current Organism:
Rhizobium phaseoli
NCBI taxonomy Id: 396
Other names: ATCC 14482, DSM 30137, IFO 14785, JCM 20683, NBRC 14785, NRRL L-321, R. phaseoli
Server load: medium (48%) [HD]
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