hom-1 protein (Rhizobium phaseoli) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Rhizobium phaseoli

NCBI taxonomy Id: 396
Other names: ATCC 14482, DSM 30137, IFO 14785, JCM 20683, NBRC 14785, NRRL L-321, R. phaseoli

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ANL58075.1	asd	AMC85_CH00651	AMC85_CH04375	Dihydrodipicolinate synthetase-like protein; Protein involved in catalytic activity and metabolic process; Belongs to the DapA family.	Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family.	0.950
ANL58075.1	hom-1	AMC85_CH00651	AMC85_CH01968	Dihydrodipicolinate synthetase-like protein; Protein involved in catalytic activity and metabolic process; Belongs to the DapA family.	Protein involved in homoserine dehydrogenase activity, NADP binding, cellular amino acid metabolic process and oxidation-reduction process.	0.923
ANL58075.1	lysC	AMC85_CH00651	AMC85_CH03939	Dihydrodipicolinate synthetase-like protein; Protein involved in catalytic activity and metabolic process; Belongs to the DapA family.	Protein involved in aspartate kinase activity and lysine biosynthetic process via diaminopimelate; Belongs to the aspartokinase family.	0.471
ANL61458.1	asd	AMC85_CH04136	AMC85_CH04375	Dihydrodipicolinate synthetase-like protein; Protein involved in catalytic activity and metabolic process; Belongs to the DapA family.	Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family.	0.941
ANL61458.1	hom-1	AMC85_CH04136	AMC85_CH01968	Dihydrodipicolinate synthetase-like protein; Protein involved in catalytic activity and metabolic process; Belongs to the DapA family.	Protein involved in homoserine dehydrogenase activity, NADP binding, cellular amino acid metabolic process and oxidation-reduction process.	0.913
asd	ANL58075.1	AMC85_CH04375	AMC85_CH00651	Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family.	Dihydrodipicolinate synthetase-like protein; Protein involved in catalytic activity and metabolic process; Belongs to the DapA family.	0.950
asd	ANL61458.1	AMC85_CH04375	AMC85_CH04136	Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family.	Dihydrodipicolinate synthetase-like protein; Protein involved in catalytic activity and metabolic process; Belongs to the DapA family.	0.941
asd	dapA-1	AMC85_CH04375	AMC85_CH01440	Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family.	Dihydrodipicolinate synthase 1; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).	0.966
asd	dapA-2	AMC85_CH04375	AMC85_CH02909	Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family.	Dihydrodipicolinate synthase 2; Protein involved in catalytic activity and metabolic process; Belongs to the DapA family.	0.946
asd	hom-1	AMC85_CH04375	AMC85_CH01968	Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family.	Protein involved in homoserine dehydrogenase activity, NADP binding, cellular amino acid metabolic process and oxidation-reduction process.	0.983
asd	lysC	AMC85_CH04375	AMC85_CH03939	Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family.	Protein involved in aspartate kinase activity and lysine biosynthetic process via diaminopimelate; Belongs to the aspartokinase family.	0.995
asd	metH	AMC85_CH04375	AMC85_CH03036	Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family.	B12-dependent methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.	0.584
asd	thrC	AMC85_CH04375	AMC85_CH01049	Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family.	Protein involved in threonine synthase activity, pyridoxal phosphate binding and threonine biosynthetic process.	0.607
dapA-1	asd	AMC85_CH01440	AMC85_CH04375	Dihydrodipicolinate synthase 1; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).	Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family.	0.966
dapA-1	hom-1	AMC85_CH01440	AMC85_CH01968	Dihydrodipicolinate synthase 1; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).	Protein involved in homoserine dehydrogenase activity, NADP binding, cellular amino acid metabolic process and oxidation-reduction process.	0.935
dapA-1	lysC	AMC85_CH01440	AMC85_CH03939	Dihydrodipicolinate synthase 1; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).	Protein involved in aspartate kinase activity and lysine biosynthetic process via diaminopimelate; Belongs to the aspartokinase family.	0.635
dapA-2	asd	AMC85_CH02909	AMC85_CH04375	Dihydrodipicolinate synthase 2; Protein involved in catalytic activity and metabolic process; Belongs to the DapA family.	Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family.	0.946
dapA-2	hom-1	AMC85_CH02909	AMC85_CH01968	Dihydrodipicolinate synthase 2; Protein involved in catalytic activity and metabolic process; Belongs to the DapA family.	Protein involved in homoserine dehydrogenase activity, NADP binding, cellular amino acid metabolic process and oxidation-reduction process.	0.922
dapA-2	lysC	AMC85_CH02909	AMC85_CH03939	Dihydrodipicolinate synthase 2; Protein involved in catalytic activity and metabolic process; Belongs to the DapA family.	Protein involved in aspartate kinase activity and lysine biosynthetic process via diaminopimelate; Belongs to the aspartokinase family.	0.482
hom-1	ANL58075.1	AMC85_CH01968	AMC85_CH00651	Protein involved in homoserine dehydrogenase activity, NADP binding, cellular amino acid metabolic process and oxidation-reduction process.	Dihydrodipicolinate synthetase-like protein; Protein involved in catalytic activity and metabolic process; Belongs to the DapA family.	0.923