Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ANL59357.1Cold shock protein CspA; Protein involved in nucleic acid binding and regulation of transcription, DNA-dependent. (192 aa)    
Predicted Functional Partners:
ANL59358.1
Hypothetical protein.
  
    0.824
ANL60505.1
Cold shock protein; Protein involved in nucleic acid binding and regulation of transcription, DNA-dependent.
  
   
 0.763
flgL
Flagellar hook-associated protein FlgL; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
      
 0.633
rpsQ
30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
   
 
 0.609
gloA
Lactoylglutathione lyase.
  
    0.609
ANL59375.1
Zinc-finger CHCC-type domain-containing protein.
  
     0.605
ANL60844.1
Hypothetical protein.
  
     0.594
tuf-1
Elongation factor Tu 1; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
   
 
 0.555
flaC-1
Flagellin C 1; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
      
 0.543
flaC-2
Flagellin C 2; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
      
 0.543
Your Current Organism:
Rhizobium phaseoli
NCBI taxonomy Id: 396
Other names: ATCC 14482, DSM 30137, IFO 14785, JCM 20683, NBRC 14785, NRRL L-321, R. phaseoli
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