STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ANL59453.1ChrR family transcriptional activator protein. (224 aa)    
Predicted Functional Partners:
ANL59452.1
Amine oxidase protein; Protein involved in oxidoreductase activity and metabolic process.
 
     0.795
rpoE-3
RNA polymerase sigma-24 factor RpoE 3; Protein involved in DNA binding, sequence-specific DNA binding transcription factor activity, sigma factor activity, transcription initiation, DNA-dependent and regulation of transcription, DNA-dependent; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.501
ANL60563.1
RNA polymerase sigma factor protein; Protein involved in DNA binding, sequence-specific DNA binding transcription factor activity, sigma factor activity, transcription initiation, DNA-dependent and regulation of transcription, DNA-dependent; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.498
rpoE-2
RNA polymerase sigma-24 factor RpoE 2; Protein involved in DNA binding, sequence-specific DNA binding transcription factor activity, sigma factor activity, transcription initiation, DNA-dependent and regulation of transcription, DNA-dependent; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.477
ANL60791.1
Response regulator protein; Protein involved in DNA binding, sequence-specific DNA binding transcription factor activity, sigma factor activity, transcription initiation, DNA-dependent and regulation of transcription, DNA-dependent.
  
 
 0.452
ANL57902.1
RNA polymerase sigma-70 factor SigK-like protein; Protein involved in DNA binding, sequence-specific DNA binding transcription factor activity, sigma factor activity, transcription initiation, DNA-dependent and regulation of transcription, DNA-dependent; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.428
ANL59262.1
NAD/FAD-binding domain-containing protein.
 
  
 0.413
rpoE-1
RNA polymerase sigma-24 factor RpoE 1; Protein involved in DNA binding, sequence-specific DNA binding transcription factor activity, sigma factor activity, transcription initiation, DNA-dependent and regulation of transcription, DNA-dependent; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.406
ANL60789.1
RNA polymerase sigma factor protein; Protein involved in DNA binding, sequence-specific DNA binding transcription factor activity, sigma factor activity, transcription initiation, DNA-dependent and regulation of transcription, DNA-dependent; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.406
Your Current Organism:
Rhizobium phaseoli
NCBI taxonomy Id: 396
Other names: ATCC 14482, DSM 30137, IFO 14785, JCM 20683, NBRC 14785, NRRL L-321, R. phaseoli
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.