Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ccdACytochrome-c-type biogenesis protein CcdA; Protein involved in cytochrome complex assembly and oxidation-reduction process. (249 aa)    
Predicted Functional Partners:
ccmC
Cytochrome-c heme transporter protein CcmC/CycZ; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmC/CycZ/HelC family.
  
  
 0.876
ANL60743.1
HlyD family secretion protein; Protein involved in protein transport.
   
  
 0.721
mdcF
Malonate transporter protein MdcF; Protein involved in transmembrane transport.
       0.699
ccmB
Cytochrome-c heme transporter protein CcmB/CycW; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmB/CycW/HelB family.
  
  
 0.692
gyrB-2
DNA gyrase subunit B 2; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase family. ParE type 1 subfamily.
      
 0.534
cycM
Cytochrome-c CycM; Protein involved in iron ion binding, electron carrier activity and heme binding.
      
 0.529
tlpA
Thiol:disulfide interchange protein TlpA; Protein involved in oxidoreductase activity, protein disulfide oxidoreductase activity, glycerol ether metabolic process and cell redox homeostasis.
 
  
 0.520
ccmG
Protein involved in oxidoreductase activity and cytochrome complex assembly.
 
  
 0.436
ANL58515.1
Protein involved in electron carrier activity, protein disulfide oxidoreductase activity and cell redox homeostasis.
 
  
 0.435
Your Current Organism:
Rhizobium phaseoli
NCBI taxonomy Id: 396
Other names: ATCC 14482, DSM 30137, IFO 14785, JCM 20683, NBRC 14785, NRRL L-321, R. phaseoli
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