Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
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[Homology]
Score
ANL59479.1Outer membrane protein. (207 aa)    
Predicted Functional Partners:
ANL57839.1
Hypothetical protein.
  
     0.729
ropA-2
Porin outer membrane protein RopA 2; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.
  
 
 0.716
ropA-1
Porin outer membrane protein RopA 1; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.
  
 
 0.712
ropA-3
Porin outer membrane protein RopA 3; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.
  
 
 0.708
ANL59654.1
Hypothetical protein.
  
     0.696
ANL59805.1
Apolipoprotein type protein.
  
     0.674
ANL58439.1
Invasion associated locus B family protein.
 
     0.653
ANL58978.1
Hypothetical protein.
  
     0.652
ANL59547.1
Invasion associated locus B family protein.
 
     0.614
ANL57876.1
Organic solvent tolerance OstA-like protein.
  
   
 0.582
Your Current Organism:
Rhizobium phaseoli
NCBI taxonomy Id: 396
Other names: ATCC 14482, DSM 30137, IFO 14785, JCM 20683, NBRC 14785, NRRL L-321, R. phaseoli
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