Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ANL59743.1 | ANL59744.1 | AMC85_CH02370 | AMC85_CH02371 | DEAD/DEAH box type DNA/RNA helicase protein; Protein involved in nucleic acid binding, ATP binding and ATP-dependent helicase activity; Belongs to the DEAD box helicase family. | Protein involved in hydrolase activity; Belongs to the Nudix hydrolase family. | 0.794 |
| ANL59743.1 | hrpB | AMC85_CH02370 | AMC85_CH00060 | DEAD/DEAH box type DNA/RNA helicase protein; Protein involved in nucleic acid binding, ATP binding and ATP-dependent helicase activity; Belongs to the DEAD box helicase family. | ATP-dependent RNA helicase HrpB; Protein involved in nucleic acid binding, ATP binding and ATP-dependent helicase activity. | 0.879 |
| ANL59743.1 | nnrE | AMC85_CH02370 | AMC85_CH02176 | DEAD/DEAH box type DNA/RNA helicase protein; Protein involved in nucleic acid binding, ATP binding and ATP-dependent helicase activity; Belongs to the DEAD box helicase family. | Carbohydrate kinase-related protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the rep [...] | 0.888 |
| ANL59743.1 | pnp | AMC85_CH02370 | AMC85_CH00149 | DEAD/DEAH box type DNA/RNA helicase protein; Protein involved in nucleic acid binding, ATP binding and ATP-dependent helicase activity; Belongs to the DEAD box helicase family. | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.852 |
| ANL59743.1 | rplC | AMC85_CH02370 | AMC85_CH01750 | DEAD/DEAH box type DNA/RNA helicase protein; Protein involved in nucleic acid binding, ATP binding and ATP-dependent helicase activity; Belongs to the DEAD box helicase family. | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.850 |
| ANL59743.1 | rplM | AMC85_CH02370 | AMC85_CH01630 | DEAD/DEAH box type DNA/RNA helicase protein; Protein involved in nucleic acid binding, ATP binding and ATP-dependent helicase activity; Belongs to the DEAD box helicase family. | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.797 |
| ANL59743.1 | rplX | AMC85_CH02370 | AMC85_CH01761 | DEAD/DEAH box type DNA/RNA helicase protein; Protein involved in nucleic acid binding, ATP binding and ATP-dependent helicase activity; Belongs to the DEAD box helicase family. | 50S ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. | 0.812 |
| ANL59743.1 | rpsA | AMC85_CH02370 | AMC85_CH00102 | DEAD/DEAH box type DNA/RNA helicase protein; Protein involved in nucleic acid binding, ATP binding and ATP-dependent helicase activity; Belongs to the DEAD box helicase family. | 30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | 0.784 |
| ANL59743.1 | rpsD | AMC85_CH02370 | AMC85_CH02404 | DEAD/DEAH box type DNA/RNA helicase protein; Protein involved in nucleic acid binding, ATP binding and ATP-dependent helicase activity; Belongs to the DEAD box helicase family. | 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.804 |
| ANL59743.1 | rpsK | AMC85_CH02370 | AMC85_CH01774 | DEAD/DEAH box type DNA/RNA helicase protein; Protein involved in nucleic acid binding, ATP binding and ATP-dependent helicase activity; Belongs to the DEAD box helicase family. | 30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.784 |
| ANL59744.1 | ANL59743.1 | AMC85_CH02371 | AMC85_CH02370 | Protein involved in hydrolase activity; Belongs to the Nudix hydrolase family. | DEAD/DEAH box type DNA/RNA helicase protein; Protein involved in nucleic acid binding, ATP binding and ATP-dependent helicase activity; Belongs to the DEAD box helicase family. | 0.794 |
| hrpB | ANL59743.1 | AMC85_CH00060 | AMC85_CH02370 | ATP-dependent RNA helicase HrpB; Protein involved in nucleic acid binding, ATP binding and ATP-dependent helicase activity. | DEAD/DEAH box type DNA/RNA helicase protein; Protein involved in nucleic acid binding, ATP binding and ATP-dependent helicase activity; Belongs to the DEAD box helicase family. | 0.879 |
| hrpB | rpsA | AMC85_CH00060 | AMC85_CH00102 | ATP-dependent RNA helicase HrpB; Protein involved in nucleic acid binding, ATP binding and ATP-dependent helicase activity. | 30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | 0.935 |
| hrpB | rpsD | AMC85_CH00060 | AMC85_CH02404 | ATP-dependent RNA helicase HrpB; Protein involved in nucleic acid binding, ATP binding and ATP-dependent helicase activity. | 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.957 |
| hrpB | rpsK | AMC85_CH00060 | AMC85_CH01774 | ATP-dependent RNA helicase HrpB; Protein involved in nucleic acid binding, ATP binding and ATP-dependent helicase activity. | 30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.908 |
| nnrE | ANL59743.1 | AMC85_CH02176 | AMC85_CH02370 | Carbohydrate kinase-related protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the rep [...] | DEAD/DEAH box type DNA/RNA helicase protein; Protein involved in nucleic acid binding, ATP binding and ATP-dependent helicase activity; Belongs to the DEAD box helicase family. | 0.888 |
| pnp | ANL59743.1 | AMC85_CH00149 | AMC85_CH02370 | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | DEAD/DEAH box type DNA/RNA helicase protein; Protein involved in nucleic acid binding, ATP binding and ATP-dependent helicase activity; Belongs to the DEAD box helicase family. | 0.852 |
| pnp | rplC | AMC85_CH00149 | AMC85_CH01750 | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.915 |
| pnp | rplM | AMC85_CH00149 | AMC85_CH01630 | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.507 |
| pnp | rplX | AMC85_CH00149 | AMC85_CH01761 | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 50S ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. | 0.514 |
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