Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ANL58023.1 | ANL59881.1 | AMC85_CH00597 | AMC85_CH02513 | Peptidoglycan-binding domain-containing protein; Protein involved in binding and metabolic process. | OmpA/MotB family outer membrane protein. | 0.603 |
ANL58023.1 | ANL60849.1 | AMC85_CH00597 | AMC85_CH03501 | Peptidoglycan-binding domain-containing protein; Protein involved in binding and metabolic process. | Chromosome segregation SMC protein. | 0.632 |
ANL58023.1 | cpoB | AMC85_CH00597 | AMC85_CH03623 | Peptidoglycan-binding domain-containing protein; Protein involved in binding and metabolic process. | YbgF domain-containing protein; Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division; Belongs to the CpoB family. | 0.513 |
ANL59824.1 | ANL59881.1 | AMC85_CH02456 | AMC85_CH02513 | TolB-like protein. | OmpA/MotB family outer membrane protein. | 0.950 |
ANL59824.1 | cpoB | AMC85_CH02456 | AMC85_CH03623 | TolB-like protein. | YbgF domain-containing protein; Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division; Belongs to the CpoB family. | 0.751 |
ANL59881.1 | ANL58023.1 | AMC85_CH02513 | AMC85_CH00597 | OmpA/MotB family outer membrane protein. | Peptidoglycan-binding domain-containing protein; Protein involved in binding and metabolic process. | 0.603 |
ANL59881.1 | ANL59824.1 | AMC85_CH02513 | AMC85_CH02456 | OmpA/MotB family outer membrane protein. | TolB-like protein. | 0.950 |
ANL59881.1 | ANL60849.1 | AMC85_CH02513 | AMC85_CH03501 | OmpA/MotB family outer membrane protein. | Chromosome segregation SMC protein. | 0.612 |
ANL59881.1 | cpoB | AMC85_CH02513 | AMC85_CH03623 | OmpA/MotB family outer membrane protein. | YbgF domain-containing protein; Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division; Belongs to the CpoB family. | 0.692 |
ANL59881.1 | nagZ | AMC85_CH02513 | AMC85_CH01908 | OmpA/MotB family outer membrane protein. | beta-N-acetylhexosaminidase; Protein involved in hydrolase activity, hydrolyzing O-glycosyl compounds and carbohydrate metabolic process. | 0.611 |
ANL59881.1 | rpoC | AMC85_CH02513 | AMC85_CH01742 | OmpA/MotB family outer membrane protein. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.637 |
ANL59881.1 | rpsM | AMC85_CH02513 | AMC85_CH01772 | OmpA/MotB family outer membrane protein. | 30S ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family. | 0.771 |
ANL59881.1 | secA | AMC85_CH02513 | AMC85_CH03952 | OmpA/MotB family outer membrane protein. | Preprotein translocase subunit SecA; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane. Belongs to the SecA family. | 0.598 |
ANL59881.1 | tolB | AMC85_CH02513 | AMC85_CH03625 | OmpA/MotB family outer membrane protein. | Translocation protein TolB; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity. | 0.950 |
ANL59881.1 | tolR | AMC85_CH02513 | AMC85_CH03628 | OmpA/MotB family outer membrane protein. | Protein involved in transporter activity and protein transport. | 0.768 |
ANL60849.1 | ANL58023.1 | AMC85_CH03501 | AMC85_CH00597 | Chromosome segregation SMC protein. | Peptidoglycan-binding domain-containing protein; Protein involved in binding and metabolic process. | 0.632 |
ANL60849.1 | ANL59881.1 | AMC85_CH03501 | AMC85_CH02513 | Chromosome segregation SMC protein. | OmpA/MotB family outer membrane protein. | 0.612 |
cpoB | ANL58023.1 | AMC85_CH03623 | AMC85_CH00597 | YbgF domain-containing protein; Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division; Belongs to the CpoB family. | Peptidoglycan-binding domain-containing protein; Protein involved in binding and metabolic process. | 0.513 |
cpoB | ANL59824.1 | AMC85_CH03623 | AMC85_CH02456 | YbgF domain-containing protein; Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division; Belongs to the CpoB family. | TolB-like protein. | 0.751 |
cpoB | ANL59881.1 | AMC85_CH03623 | AMC85_CH02513 | YbgF domain-containing protein; Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division; Belongs to the CpoB family. | OmpA/MotB family outer membrane protein. | 0.692 |
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