ANL60368.1 protein (Rhizobium phaseoli) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ANL60368.1

L,D-transpeptidase domain-containing protein; Protein involved in transferase activity. (466 aa)

Predicted Functional Partners:

ANL58808.1

0.690

ANL58298.1

0.674

ANL58297.1

0.630

ANL60369.1

0.553

ANL58663.1

0.504

ANL60370.1

0.503

ANL57508.1

0.496

ANL58664.1

0.491

ANL58349.1

0.490

ANL60367.1

0.402

Your Current Organism:

Rhizobium phaseoli

NCBI taxonomy Id: 396
Other names: ATCC 14482, DSM 30137, IFO 14785, JCM 20683, NBRC 14785, NRRL L-321, R. phaseoli

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ANL57508.1	ANL60368.1	AMC85_CH00056	AMC85_CH03013	L,D-transpeptidase domain-containing protein; Protein involved in transferase activity.	L,D-transpeptidase domain-containing protein; Protein involved in transferase activity.	0.496
ANL58297.1	ANL58298.1	AMC85_CH00878	AMC85_CH00879	L,D-transpeptidase domain-containing protein; Protein involved in transferase activity.	L,D-transpeptidase domain-containing protein; Protein involved in transferase activity.	0.530
ANL58297.1	ANL60368.1	AMC85_CH00878	AMC85_CH03013	L,D-transpeptidase domain-containing protein; Protein involved in transferase activity.	L,D-transpeptidase domain-containing protein; Protein involved in transferase activity.	0.630
ANL58298.1	ANL58297.1	AMC85_CH00879	AMC85_CH00878	L,D-transpeptidase domain-containing protein; Protein involved in transferase activity.	L,D-transpeptidase domain-containing protein; Protein involved in transferase activity.	0.530
ANL58298.1	ANL60368.1	AMC85_CH00879	AMC85_CH03013	L,D-transpeptidase domain-containing protein; Protein involved in transferase activity.	L,D-transpeptidase domain-containing protein; Protein involved in transferase activity.	0.674
ANL58349.1	ANL60368.1	AMC85_CH00930	AMC85_CH03013	Cell wall hydrolase SleB-like protein; Protein involved in hydrolase activity and spore germination.	L,D-transpeptidase domain-containing protein; Protein involved in transferase activity.	0.490
ANL58663.1	ANL58664.1	AMC85_CH01247	AMC85_CH01248	L,D-transpeptidase domain-containing protein; Protein involved in transferase activity.	L,D-transpeptidase domain-containing protein; Protein involved in transferase activity.	0.582
ANL58663.1	ANL60368.1	AMC85_CH01247	AMC85_CH03013	L,D-transpeptidase domain-containing protein; Protein involved in transferase activity.	L,D-transpeptidase domain-containing protein; Protein involved in transferase activity.	0.504
ANL58664.1	ANL58663.1	AMC85_CH01248	AMC85_CH01247	L,D-transpeptidase domain-containing protein; Protein involved in transferase activity.	L,D-transpeptidase domain-containing protein; Protein involved in transferase activity.	0.582
ANL58664.1	ANL60368.1	AMC85_CH01248	AMC85_CH03013	L,D-transpeptidase domain-containing protein; Protein involved in transferase activity.	L,D-transpeptidase domain-containing protein; Protein involved in transferase activity.	0.491
ANL58808.1	ANL60368.1	AMC85_CH01395	AMC85_CH03013	L,D-transpeptidase domain-containing protein; Protein involved in transferase activity.	L,D-transpeptidase domain-containing protein; Protein involved in transferase activity.	0.690
ANL60367.1	ANL60368.1	AMC85_CH03012	AMC85_CH03013	Aldose 1-epimerase family protein.	L,D-transpeptidase domain-containing protein; Protein involved in transferase activity.	0.402
ANL60368.1	ANL57508.1	AMC85_CH03013	AMC85_CH00056	L,D-transpeptidase domain-containing protein; Protein involved in transferase activity.	L,D-transpeptidase domain-containing protein; Protein involved in transferase activity.	0.496
ANL60368.1	ANL58297.1	AMC85_CH03013	AMC85_CH00878	L,D-transpeptidase domain-containing protein; Protein involved in transferase activity.	L,D-transpeptidase domain-containing protein; Protein involved in transferase activity.	0.630
ANL60368.1	ANL58298.1	AMC85_CH03013	AMC85_CH00879	L,D-transpeptidase domain-containing protein; Protein involved in transferase activity.	L,D-transpeptidase domain-containing protein; Protein involved in transferase activity.	0.674
ANL60368.1	ANL58349.1	AMC85_CH03013	AMC85_CH00930	L,D-transpeptidase domain-containing protein; Protein involved in transferase activity.	Cell wall hydrolase SleB-like protein; Protein involved in hydrolase activity and spore germination.	0.490
ANL60368.1	ANL58663.1	AMC85_CH03013	AMC85_CH01247	L,D-transpeptidase domain-containing protein; Protein involved in transferase activity.	L,D-transpeptidase domain-containing protein; Protein involved in transferase activity.	0.504
ANL60368.1	ANL58664.1	AMC85_CH03013	AMC85_CH01248	L,D-transpeptidase domain-containing protein; Protein involved in transferase activity.	L,D-transpeptidase domain-containing protein; Protein involved in transferase activity.	0.491
ANL60368.1	ANL58808.1	AMC85_CH03013	AMC85_CH01395	L,D-transpeptidase domain-containing protein; Protein involved in transferase activity.	L,D-transpeptidase domain-containing protein; Protein involved in transferase activity.	0.690
ANL60368.1	ANL60367.1	AMC85_CH03013	AMC85_CH03012	L,D-transpeptidase domain-containing protein; Protein involved in transferase activity.	Aldose 1-epimerase family protein.	0.402