ANL60420.1 protein (Rhizobium phaseoli) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ANL60420.1

Helicase/restriction endonuclease domain-containing protein. (1040 aa)

Predicted Functional Partners:

ANL60418.1

0.930

ANL58531.1

0.896

ANL60417.1

0.819

ANL60419.1

0.796

iolB

0.777

ANL60416.1

0.776

gltB

0.664

ANL58252.1

0.556

ANL58262.1

0.547

ANL58261.1

0.546

Your Current Organism:

Rhizobium phaseoli

NCBI taxonomy Id: 396
Other names: ATCC 14482, DSM 30137, IFO 14785, JCM 20683, NBRC 14785, NRRL L-321, R. phaseoli

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ANL58252.1	ANL58531.1	AMC85_CH00830	AMC85_CH01113	Hypothetical protein.	Type II restriction enzyme methylase subunit protein.	0.492
ANL58252.1	ANL60420.1	AMC85_CH00830	AMC85_CH03066	Hypothetical protein.	Helicase/restriction endonuclease domain-containing protein.	0.556
ANL58261.1	ANL58262.1	AMC85_CH00839	AMC85_CH00840	Type I restriction-modification system HsdM subunit protein; Overlaps another CDS with the same product name; Protein involved in site-specific DNA-methyltransferase (adenine-specific) activity, N-methyltransferase activity and DNA methylation.	Type I restriction-modification system HsdM subunit protein; Overlaps another CDS with the same product name; Protein involved in site-specific DNA-methyltransferase (adenine-specific) activity, N-methyltransferase activity and DNA methylation.	0.791
ANL58261.1	ANL58531.1	AMC85_CH00839	AMC85_CH01113	Type I restriction-modification system HsdM subunit protein; Overlaps another CDS with the same product name; Protein involved in site-specific DNA-methyltransferase (adenine-specific) activity, N-methyltransferase activity and DNA methylation.	Type II restriction enzyme methylase subunit protein.	0.477
ANL58261.1	ANL60420.1	AMC85_CH00839	AMC85_CH03066	Type I restriction-modification system HsdM subunit protein; Overlaps another CDS with the same product name; Protein involved in site-specific DNA-methyltransferase (adenine-specific) activity, N-methyltransferase activity and DNA methylation.	Helicase/restriction endonuclease domain-containing protein.	0.546
ANL58262.1	ANL58261.1	AMC85_CH00840	AMC85_CH00839	Type I restriction-modification system HsdM subunit protein; Overlaps another CDS with the same product name; Protein involved in site-specific DNA-methyltransferase (adenine-specific) activity, N-methyltransferase activity and DNA methylation.	Type I restriction-modification system HsdM subunit protein; Overlaps another CDS with the same product name; Protein involved in site-specific DNA-methyltransferase (adenine-specific) activity, N-methyltransferase activity and DNA methylation.	0.791
ANL58262.1	ANL58531.1	AMC85_CH00840	AMC85_CH01113	Type I restriction-modification system HsdM subunit protein; Overlaps another CDS with the same product name; Protein involved in site-specific DNA-methyltransferase (adenine-specific) activity, N-methyltransferase activity and DNA methylation.	Type II restriction enzyme methylase subunit protein.	0.477
ANL58262.1	ANL60420.1	AMC85_CH00840	AMC85_CH03066	Type I restriction-modification system HsdM subunit protein; Overlaps another CDS with the same product name; Protein involved in site-specific DNA-methyltransferase (adenine-specific) activity, N-methyltransferase activity and DNA methylation.	Helicase/restriction endonuclease domain-containing protein.	0.547
ANL58531.1	ANL58252.1	AMC85_CH01113	AMC85_CH00830	Type II restriction enzyme methylase subunit protein.	Hypothetical protein.	0.492
ANL58531.1	ANL58261.1	AMC85_CH01113	AMC85_CH00839	Type II restriction enzyme methylase subunit protein.	Type I restriction-modification system HsdM subunit protein; Overlaps another CDS with the same product name; Protein involved in site-specific DNA-methyltransferase (adenine-specific) activity, N-methyltransferase activity and DNA methylation.	0.477
ANL58531.1	ANL58262.1	AMC85_CH01113	AMC85_CH00840	Type II restriction enzyme methylase subunit protein.	Type I restriction-modification system HsdM subunit protein; Overlaps another CDS with the same product name; Protein involved in site-specific DNA-methyltransferase (adenine-specific) activity, N-methyltransferase activity and DNA methylation.	0.477
ANL58531.1	ANL60420.1	AMC85_CH01113	AMC85_CH03066	Type II restriction enzyme methylase subunit protein.	Helicase/restriction endonuclease domain-containing protein.	0.896
ANL58531.1	iolB	AMC85_CH01113	AMC85_CH01428	Type II restriction enzyme methylase subunit protein.	5-deoxy-glucuronate isomerase; Protein involved in intramolecular oxidoreductase activity, interconverting aldoses and ketoses and metabolic process.	0.835
ANL60416.1	ANL60417.1	AMC85_CH03062	AMC85_CH03063	Hypothetical protein.	Hypothetical protein.	0.785
ANL60416.1	ANL60418.1	AMC85_CH03062	AMC85_CH03064	Hypothetical protein.	Hypothetical protein.	0.781
ANL60416.1	ANL60419.1	AMC85_CH03062	AMC85_CH03065	Hypothetical protein.	Chromosome segregation Smc family protein.	0.764
ANL60416.1	ANL60420.1	AMC85_CH03062	AMC85_CH03066	Hypothetical protein.	Helicase/restriction endonuclease domain-containing protein.	0.776
ANL60417.1	ANL60416.1	AMC85_CH03063	AMC85_CH03062	Hypothetical protein.	Hypothetical protein.	0.785
ANL60417.1	ANL60418.1	AMC85_CH03063	AMC85_CH03064	Hypothetical protein.	Hypothetical protein.	0.796
ANL60417.1	ANL60419.1	AMC85_CH03063	AMC85_CH03065	Hypothetical protein.	Chromosome segregation Smc family protein.	0.764