Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ANL60505.1Cold shock protein; Protein involved in nucleic acid binding and regulation of transcription, DNA-dependent. (71 aa)    
Predicted Functional Partners:
ANL59357.1
Cold shock protein CspA; Protein involved in nucleic acid binding and regulation of transcription, DNA-dependent.
  
   
 0.763
flaC-1
Flagellin C 1; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
      
 0.692
flaC-2
Flagellin C 2; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
      
 0.692
flaC-3
Flagellin C 3; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
      
 0.692
flaC-4
Flagellin C 4; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
      
 0.692
ANL60294.1
Flagellin domain-containing protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
      
 0.692
flaC-5
Flagellin C 5; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
      
 0.692
flgL
Flagellar hook-associated protein FlgL; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
      
 0.599
rpsQ
30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
   
 
 0.557
rpsL
30S ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit.
   
 
 0.518
Your Current Organism:
Rhizobium phaseoli
NCBI taxonomy Id: 396
Other names: ATCC 14482, DSM 30137, IFO 14785, JCM 20683, NBRC 14785, NRRL L-321, R. phaseoli
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