Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ANL60722.1YcaO-like protein. (378 aa)    
Predicted Functional Partners:
ANL60721.1
TfuA-like domain-containing protein.
 
  
 0.975
ANL57465.1
Protein involved in oxidoreductase activity.
  
  
 0.937
ANL59653.1
Protein involved in oxidoreductase activity.
  
  
 0.937
bluB
cob(II)yrinic acid a,c-diamide reductase; Protein involved in oxidoreductase activity.
  
  
 0.918
ANL60724.1
Transcriptional regulator SARP family/tetratricopeptide repeat domain-containing protein; Protein involved in two-component response regulator activity, DNA binding, two-component signal transduction system (phosphorelay) and regulation of transcription, DNA-dependent.
 
     0.877
yadH
ABC transporter permease protein YadH; Protein involved in transporter activity and transport.
  
  
 0.605
ybhS
ABC transporter permease protein YbhS; Protein involved in ATP binding, ATPase activity, coupled to transmembrane movement of substances and transport.
  
  
 0.605
ybhR
ABC transporter permease protein YbhR; Protein involved in ATP binding, ATPase activity, coupled to transmembrane movement of substances and transport.
  
  
 0.605
ANL60723.1
Hypothetical protein.
       0.578
ANL60725.1
XRE family transcriptional regulator protein; Protein involved in DNA binding.
       0.540
Your Current Organism:
Rhizobium phaseoli
NCBI taxonomy Id: 396
Other names: ATCC 14482, DSM 30137, IFO 14785, JCM 20683, NBRC 14785, NRRL L-321, R. phaseoli
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