thuA-1 protein (Rhizobium phaseoli) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

thuA-1

Trehalose catabolism protein ThuA 1. (261 aa)

Predicted Functional Partners:

thuB-1

0.953

ANL59496.1

0.742

ANL59919.1

0.732

ANL61569.1

0.706

ANL59495.1

0.685

ANL59920.1

0.673

ANL61421.1

0.574

ANL59921.1

0.530

ANL59275.1

0.510

ANL57953.1

0.504

Your Current Organism:

Rhizobium phaseoli

NCBI taxonomy Id: 396
Other names: ATCC 14482, DSM 30137, IFO 14785, JCM 20683, NBRC 14785, NRRL L-321, R. phaseoli

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ANL57953.1	ANL59495.1	AMC85_CH00522	AMC85_CH02119	Glycoside hydrolase family 2 protein; Protein involved in hydrolase activity, hydrolyzing O-glycosyl compounds, cation binding and carbohydrate metabolic process.	Glutamine amidotransferase-like domain-containing protein.	0.575
ANL57953.1	ANL59496.1	AMC85_CH00522	AMC85_CH02120	Glycoside hydrolase family 2 protein; Protein involved in hydrolase activity, hydrolyzing O-glycosyl compounds, cation binding and carbohydrate metabolic process.	Protein involved in nucleotide binding.	0.564
ANL57953.1	ANL59919.1	AMC85_CH00522	AMC85_CH02551	Glycoside hydrolase family 2 protein; Protein involved in hydrolase activity, hydrolyzing O-glycosyl compounds, cation binding and carbohydrate metabolic process.	Protein involved in nucleotide binding.	0.476
ANL57953.1	ANL59921.1	AMC85_CH00522	AMC85_CH02553	Glycoside hydrolase family 2 protein; Protein involved in hydrolase activity, hydrolyzing O-glycosyl compounds, cation binding and carbohydrate metabolic process.	Glycoside hydrolase family 2 protein; Protein involved in hydrolase activity, hydrolyzing O-glycosyl compounds, cation binding and carbohydrate metabolic process.	0.922
ANL57953.1	ANL61421.1	AMC85_CH00522	AMC85_CH04099	Glycoside hydrolase family 2 protein; Protein involved in hydrolase activity, hydrolyzing O-glycosyl compounds, cation binding and carbohydrate metabolic process.	Six-hairpin glycosidase-like protein; Protein involved in catalytic activity.	0.617
ANL57953.1	ANL61569.1	AMC85_CH00522	AMC85_CH04249	Glycoside hydrolase family 2 protein; Protein involved in hydrolase activity, hydrolyzing O-glycosyl compounds, cation binding and carbohydrate metabolic process.	Glutamine amidotransferase-like domain-containing protein.	0.607
ANL57953.1	thuA-1	AMC85_CH00522	AMC85_CH03424	Glycoside hydrolase family 2 protein; Protein involved in hydrolase activity, hydrolyzing O-glycosyl compounds, cation binding and carbohydrate metabolic process.	Trehalose catabolism protein ThuA 1.	0.504
ANL59275.1	ANL59495.1	AMC85_CH01885	AMC85_CH02119	NAD-dependent epimerase/dehydratase family protein; Protein involved in nucleotide binding, coenzyme binding and cellular metabolic process.	Glutamine amidotransferase-like domain-containing protein.	0.558
ANL59275.1	ANL59496.1	AMC85_CH01885	AMC85_CH02120	NAD-dependent epimerase/dehydratase family protein; Protein involved in nucleotide binding, coenzyme binding and cellular metabolic process.	Protein involved in nucleotide binding.	0.623
ANL59275.1	ANL59919.1	AMC85_CH01885	AMC85_CH02551	NAD-dependent epimerase/dehydratase family protein; Protein involved in nucleotide binding, coenzyme binding and cellular metabolic process.	Protein involved in nucleotide binding.	0.498
ANL59275.1	ANL61569.1	AMC85_CH01885	AMC85_CH04249	NAD-dependent epimerase/dehydratase family protein; Protein involved in nucleotide binding, coenzyme binding and cellular metabolic process.	Glutamine amidotransferase-like domain-containing protein.	0.520
ANL59275.1	thuA-1	AMC85_CH01885	AMC85_CH03424	NAD-dependent epimerase/dehydratase family protein; Protein involved in nucleotide binding, coenzyme binding and cellular metabolic process.	Trehalose catabolism protein ThuA 1.	0.510
ANL59495.1	ANL57953.1	AMC85_CH02119	AMC85_CH00522	Glutamine amidotransferase-like domain-containing protein.	Glycoside hydrolase family 2 protein; Protein involved in hydrolase activity, hydrolyzing O-glycosyl compounds, cation binding and carbohydrate metabolic process.	0.575
ANL59495.1	ANL59275.1	AMC85_CH02119	AMC85_CH01885	Glutamine amidotransferase-like domain-containing protein.	NAD-dependent epimerase/dehydratase family protein; Protein involved in nucleotide binding, coenzyme binding and cellular metabolic process.	0.558
ANL59495.1	ANL59496.1	AMC85_CH02119	AMC85_CH02120	Glutamine amidotransferase-like domain-containing protein.	Protein involved in nucleotide binding.	0.939
ANL59495.1	ANL59919.1	AMC85_CH02119	AMC85_CH02551	Glutamine amidotransferase-like domain-containing protein.	Protein involved in nucleotide binding.	0.765
ANL59495.1	ANL59920.1	AMC85_CH02119	AMC85_CH02552	Glutamine amidotransferase-like domain-containing protein.	Xylose isomerase domain-containing protein.	0.591
ANL59495.1	ANL59921.1	AMC85_CH02119	AMC85_CH02553	Glutamine amidotransferase-like domain-containing protein.	Glycoside hydrolase family 2 protein; Protein involved in hydrolase activity, hydrolyzing O-glycosyl compounds, cation binding and carbohydrate metabolic process.	0.531
ANL59495.1	ANL61421.1	AMC85_CH02119	AMC85_CH04099	Glutamine amidotransferase-like domain-containing protein.	Six-hairpin glycosidase-like protein; Protein involved in catalytic activity.	0.541
ANL59495.1	thuA-1	AMC85_CH02119	AMC85_CH03424	Glutamine amidotransferase-like domain-containing protein.	Trehalose catabolism protein ThuA 1.	0.685