ANL60795.1 protein (Rhizobium phaseoli) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Rhizobium phaseoli

NCBI taxonomy Id: 396
Other names: ATCC 14482, DSM 30137, IFO 14785, JCM 20683, NBRC 14785, NRRL L-321, R. phaseoli

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ANL58179.1	ANL60795.1	AMC85_CH00756	AMC85_CH03447	Protein involved in oxidation-reduction process.	AraC family transcriptional regulator protein; Protein involved in sequence-specific DNA binding transcription factor activity, sequence-specific DNA binding and regulation of transcription, DNA-dependent.	0.452
ANL60064.1	ANL60795.1	AMC85_CH02700	AMC85_CH03447	AraC family transcriptional regulator protein; Protein involved in sequence-specific DNA binding transcription factor activity, sequence-specific DNA binding and regulation of transcription, DNA-dependent.	AraC family transcriptional regulator protein; Protein involved in sequence-specific DNA binding transcription factor activity, sequence-specific DNA binding and regulation of transcription, DNA-dependent.	0.555
ANL60795.1	ANL58179.1	AMC85_CH03447	AMC85_CH00756	AraC family transcriptional regulator protein; Protein involved in sequence-specific DNA binding transcription factor activity, sequence-specific DNA binding and regulation of transcription, DNA-dependent.	Protein involved in oxidation-reduction process.	0.452
ANL60795.1	ANL60064.1	AMC85_CH03447	AMC85_CH02700	AraC family transcriptional regulator protein; Protein involved in sequence-specific DNA binding transcription factor activity, sequence-specific DNA binding and regulation of transcription, DNA-dependent.	AraC family transcriptional regulator protein; Protein involved in sequence-specific DNA binding transcription factor activity, sequence-specific DNA binding and regulation of transcription, DNA-dependent.	0.555
ANL60795.1	ANL60796.1	AMC85_CH03447	AMC85_CH03448	AraC family transcriptional regulator protein; Protein involved in sequence-specific DNA binding transcription factor activity, sequence-specific DNA binding and regulation of transcription, DNA-dependent.	Protein involved in thiosulfate sulfurtransferase activity.	0.843
ANL60795.1	sigA	AMC85_CH03447	AMC85_CH03106	AraC family transcriptional regulator protein; Protein involved in sequence-specific DNA binding transcription factor activity, sequence-specific DNA binding and regulation of transcription, DNA-dependent.	RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.	0.607
ANL60796.1	ANL60795.1	AMC85_CH03448	AMC85_CH03447	Protein involved in thiosulfate sulfurtransferase activity.	AraC family transcriptional regulator protein; Protein involved in sequence-specific DNA binding transcription factor activity, sequence-specific DNA binding and regulation of transcription, DNA-dependent.	0.843
sigA	ANL60795.1	AMC85_CH03106	AMC85_CH03447	RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.	AraC family transcriptional regulator protein; Protein involved in sequence-specific DNA binding transcription factor activity, sequence-specific DNA binding and regulation of transcription, DNA-dependent.	0.607