ANL60841.1 protein (Rhizobium phaseoli) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ANL60841.1

Helix-turn-helix domain-containing protein. (108 aa)

Predicted Functional Partners:

flbT

0.904

flaF

0.835

ANL58334.1

0.744

ANL60847.1

0.730

ANL61008.1

0.729

ANL60848.1

0.696

ANL58465.1

0.690

ANL61526.1

0.664

ANL58329.1

0.634

fliG

0.624

Your Current Organism:

Rhizobium phaseoli

NCBI taxonomy Id: 396
Other names: ATCC 14482, DSM 30137, IFO 14785, JCM 20683, NBRC 14785, NRRL L-321, R. phaseoli

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ANL58329.1	ANL58334.1	AMC85_CH00910	AMC85_CH00915	Hypothetical protein.	Hypothetical protein.	0.567
ANL58329.1	ANL60841.1	AMC85_CH00910	AMC85_CH03493	Hypothetical protein.	Helix-turn-helix domain-containing protein.	0.634
ANL58329.1	ANL60848.1	AMC85_CH00910	AMC85_CH03500	Hypothetical protein.	Hypothetical protein.	0.423
ANL58334.1	ANL58329.1	AMC85_CH00915	AMC85_CH00910	Hypothetical protein.	Hypothetical protein.	0.567
ANL58334.1	ANL60841.1	AMC85_CH00915	AMC85_CH03493	Hypothetical protein.	Helix-turn-helix domain-containing protein.	0.744
ANL58334.1	ANL60847.1	AMC85_CH00915	AMC85_CH03499	Hypothetical protein.	Hypothetical protein.	0.695
ANL58334.1	ANL60848.1	AMC85_CH00915	AMC85_CH03500	Hypothetical protein.	Hypothetical protein.	0.769
ANL58334.1	ANL61008.1	AMC85_CH00915	AMC85_CH03673	Hypothetical protein.	Hypothetical protein.	0.681
ANL58334.1	ANL61526.1	AMC85_CH00915	AMC85_CH04204	Hypothetical protein.	Hypothetical protein.	0.570
ANL58465.1	ANL60841.1	AMC85_CH01046	AMC85_CH03493	GGDEF/EAL domain-containing protein; Protein involved in protein binding, regulation of transcription, DNA-dependent and signal transduction.	Helix-turn-helix domain-containing protein.	0.690
ANL58465.1	ANL60847.1	AMC85_CH01046	AMC85_CH03499	GGDEF/EAL domain-containing protein; Protein involved in protein binding, regulation of transcription, DNA-dependent and signal transduction.	Hypothetical protein.	0.469
ANL58465.1	flaF	AMC85_CH01046	AMC85_CH00731	GGDEF/EAL domain-containing protein; Protein involved in protein binding, regulation of transcription, DNA-dependent and signal transduction.	Flagellar biosynthesis regulatory protein FlaF.	0.672
ANL58465.1	flbT	AMC85_CH01046	AMC85_CH00732	GGDEF/EAL domain-containing protein; Protein involved in protein binding, regulation of transcription, DNA-dependent and signal transduction.	Flagellum biosynthesis repressor protein FlbT; Has a post-transcriptional repressor function in flagellum biogenesis. Associates with the 5'-UTR of fljK mRNA and promotes its degradation.	0.632
ANL58465.1	fliG	AMC85_CH01046	AMC85_CH00700	GGDEF/EAL domain-containing protein; Protein involved in protein binding, regulation of transcription, DNA-dependent and signal transduction.	Protein involved in motor activity, ciliary or flagellar motility and chemotaxis.	0.750
ANL60841.1	ANL58329.1	AMC85_CH03493	AMC85_CH00910	Helix-turn-helix domain-containing protein.	Hypothetical protein.	0.634
ANL60841.1	ANL58334.1	AMC85_CH03493	AMC85_CH00915	Helix-turn-helix domain-containing protein.	Hypothetical protein.	0.744
ANL60841.1	ANL58465.1	AMC85_CH03493	AMC85_CH01046	Helix-turn-helix domain-containing protein.	GGDEF/EAL domain-containing protein; Protein involved in protein binding, regulation of transcription, DNA-dependent and signal transduction.	0.690
ANL60841.1	ANL60847.1	AMC85_CH03493	AMC85_CH03499	Helix-turn-helix domain-containing protein.	Hypothetical protein.	0.730
ANL60841.1	ANL60848.1	AMC85_CH03493	AMC85_CH03500	Helix-turn-helix domain-containing protein.	Hypothetical protein.	0.696
ANL60841.1	ANL61008.1	AMC85_CH03493	AMC85_CH03673	Helix-turn-helix domain-containing protein.	Hypothetical protein.	0.729