ANL61614.1 protein (Rhizobium phaseoli) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ANL61614.1

RNA-binding S4 domain-containing protein; Protein involved in RNA binding. (134 aa)

Predicted Functional Partners:

rplS

0.893

hslO

0.884

rplQ

0.857

rpoC

0.853

rpmB

0.850

rplB

0.837

rplT

0.829

ANL61613.1

0.829

rplU

0.826

rpmI

0.825

Your Current Organism:

Rhizobium phaseoli

NCBI taxonomy Id: 396
Other names: ATCC 14482, DSM 30137, IFO 14785, JCM 20683, NBRC 14785, NRRL L-321, R. phaseoli

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ANL61613.1	ANL61614.1	AMC85_CH04293	AMC85_CH04294	Protein involved in nucleic acid binding, helicase activity and ATP binding.	RNA-binding S4 domain-containing protein; Protein involved in RNA binding.	0.829
ANL61613.1	rplB	AMC85_CH04293	AMC85_CH01753	Protein involved in nucleic acid binding, helicase activity and ATP binding.	50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	0.681
ANL61613.1	rplQ	AMC85_CH04293	AMC85_CH01777	Protein involved in nucleic acid binding, helicase activity and ATP binding.	50S ribosomal protein L17; Protein involved in structural constituent of ribosome and translation.	0.614
ANL61613.1	rplU	AMC85_CH04293	AMC85_CH04337	Protein involved in nucleic acid binding, helicase activity and ATP binding.	50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.541
ANL61613.1	rpmI	AMC85_CH04293	AMC85_CH00299	Protein involved in nucleic acid binding, helicase activity and ATP binding.	50S ribosomal protein L35; Protein involved in structural constituent of ribosome and translation; Belongs to the bacterial ribosomal protein bL35 family.	0.619
ANL61613.1	rpoC	AMC85_CH04293	AMC85_CH01742	Protein involved in nucleic acid binding, helicase activity and ATP binding.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.802
ANL61614.1	ANL61613.1	AMC85_CH04294	AMC85_CH04293	RNA-binding S4 domain-containing protein; Protein involved in RNA binding.	Protein involved in nucleic acid binding, helicase activity and ATP binding.	0.829
ANL61614.1	hslO	AMC85_CH04294	AMC85_CH00563	RNA-binding S4 domain-containing protein; Protein involved in RNA binding.	Hsp33 chaperonin; Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress; Belongs to the HSP33 family.	0.884
ANL61614.1	rplB	AMC85_CH04294	AMC85_CH01753	RNA-binding S4 domain-containing protein; Protein involved in RNA binding.	50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	0.837
ANL61614.1	rplQ	AMC85_CH04294	AMC85_CH01777	RNA-binding S4 domain-containing protein; Protein involved in RNA binding.	50S ribosomal protein L17; Protein involved in structural constituent of ribosome and translation.	0.857
ANL61614.1	rplS	AMC85_CH04294	AMC85_CH04224	RNA-binding S4 domain-containing protein; Protein involved in RNA binding.	50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.893
ANL61614.1	rplT	AMC85_CH04294	AMC85_CH00300	RNA-binding S4 domain-containing protein; Protein involved in RNA binding.	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.829
ANL61614.1	rplU	AMC85_CH04294	AMC85_CH04337	RNA-binding S4 domain-containing protein; Protein involved in RNA binding.	50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.826
ANL61614.1	rpmB	AMC85_CH04294	AMC85_CH04001	RNA-binding S4 domain-containing protein; Protein involved in RNA binding.	50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.	0.850
ANL61614.1	rpmI	AMC85_CH04294	AMC85_CH00299	RNA-binding S4 domain-containing protein; Protein involved in RNA binding.	50S ribosomal protein L35; Protein involved in structural constituent of ribosome and translation; Belongs to the bacterial ribosomal protein bL35 family.	0.825
ANL61614.1	rpoC	AMC85_CH04294	AMC85_CH01742	RNA-binding S4 domain-containing protein; Protein involved in RNA binding.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.853
hslO	ANL61614.1	AMC85_CH00563	AMC85_CH04294	Hsp33 chaperonin; Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress; Belongs to the HSP33 family.	RNA-binding S4 domain-containing protein; Protein involved in RNA binding.	0.884
rplB	ANL61613.1	AMC85_CH01753	AMC85_CH04293	50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	Protein involved in nucleic acid binding, helicase activity and ATP binding.	0.681
rplB	ANL61614.1	AMC85_CH01753	AMC85_CH04294	50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	RNA-binding S4 domain-containing protein; Protein involved in RNA binding.	0.837
rplB	rplQ	AMC85_CH01753	AMC85_CH01777	50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	50S ribosomal protein L17; Protein involved in structural constituent of ribosome and translation.	0.997