STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BF93_00595Transmembrane anti-sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology. (226 aa)    
Predicted Functional Partners:
BF93_00590
RNA polymerase sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.
 
 0.998
BF93_00600
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.727
BF93_00585
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.589
BF93_00580
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.577
BF93_12130
RNA polymerase sigma 70; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family.
  
   0.531
BF93_00605
Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.518
BF93_15175
RNA polymerase sigma factor SigK; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.
   
 
 0.504
BF93_15630
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.504
BF93_16565
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
   0.455
BF93_00870
RNA polymerase sigma24 factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family.
   
   0.454
Your Current Organism:
Brachybacterium phenoliresistens
NCBI taxonomy Id: 396014
Other names: B. phenoliresistens, BCRC 17589, Brachybacterium phenoliresistens Chou et al. 2007, Brachybacterium sp. phenol-A, JCM 15157, LMG 23707, LMG:23707, strain phenol-A
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