STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BF93_01090Peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (422 aa)    
Predicted Functional Partners:
BF93_01085
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.993
BF93_14030
copC domain protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.892
BF93_01080
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.860
BF93_15780
Peptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    0.714
BF93_01075
LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family.
       0.592
pheA
Prephenate dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.498
tatA
Preprotein translocase subunit TatA; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.
 
  
 0.442
BF93_11600
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.433
BF93_07520
Glutathione S-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.432
BF93_01095
Sugar kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.429
Your Current Organism:
Brachybacterium phenoliresistens
NCBI taxonomy Id: 396014
Other names: B. phenoliresistens, BCRC 17589, Brachybacterium phenoliresistens Chou et al. 2007, Brachybacterium sp. phenol-A, JCM 15157, LMG 23707, LMG:23707, strain phenol-A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.