Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
BF93_01485Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (305 aa)    
Predicted Functional Partners:
BF93_18145
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.808
BF93_07515
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.570
BF93_08475
Signal peptide protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.565
BF93_00120
UDP-N-acetylmuramyl pentapeptide phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.554
BF93_12655
LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family.
   
    0.546
BF93_01480
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.522
BF93_08875
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.492
BF93_10525
NAD-dependent deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.492
BF93_01385
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.491
BF93_07225
Hypothetical protein; Required for morphogenesis under gluconeogenic growth conditions; Belongs to the gluconeogenesis factor family.
  
     0.472
Your Current Organism:
Brachybacterium phenoliresistens
NCBI taxonomy Id: 396014
Other names: B. phenoliresistens, BCRC 17589, Brachybacterium phenoliresistens Chou et al. 2007, Brachybacterium sp. phenol-A, JCM 15157, LMG 23707, LMG:23707, strain phenol-A
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