Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BF93_01520Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (256 aa)    
Predicted Functional Partners:
BF93_03575
3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.884
BF93_07620
acyl-CoA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.878
BF93_13820
Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
    
 0.867
BF93_01525
F420-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
kgd
Alpha-ketoglutarate decarboxylase; Kgd; produces succinic semialdehyde; part of alternative pathway from alpha-ketoglutarate to succinate; essential for normal growth; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.715
BF93_01540
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.700
BF93_06070
acyl-CoA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.681
BF93_01535
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.614
BF93_00265
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.589
BF93_01670
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.588
Your Current Organism:
Brachybacterium phenoliresistens
NCBI taxonomy Id: 396014
Other names: B. phenoliresistens, BCRC 17589, Brachybacterium phenoliresistens Chou et al. 2007, Brachybacterium sp. phenol-A, JCM 15157, LMG 23707, LMG:23707, strain phenol-A
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