STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BF93_01905Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (215 aa)    
Predicted Functional Partners:
clpS
Clp protease ClpS; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family.
 
  
 0.860
BF93_07615
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.723
BF93_07050
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.719
BF93_13825
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.657
BF93_18190
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.646
BF93_11565
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.632
murI
Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis.
       0.631
BF93_01915
Metal-dependent hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.631
BF93_01895
Nicotinate phosphoribosyltransferase; Catalyzes the first step in the biosynthesis of NAD from nicotinic acid, the ATP-dependent synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate. Belongs to the NAPRTase family.
       0.622
BF93_18960
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.615
Your Current Organism:
Brachybacterium phenoliresistens
NCBI taxonomy Id: 396014
Other names: B. phenoliresistens, BCRC 17589, Brachybacterium phenoliresistens Chou et al. 2007, Brachybacterium sp. phenol-A, JCM 15157, LMG 23707, LMG:23707, strain phenol-A
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