STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BF93_02055Multidrug ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (577 aa)    
Predicted Functional Partners:
BF93_02060
Multidrug ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
0.931
BF93_12605
ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
0.839
BF93_15260
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
 
0.827
BF93_12600
ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 
0.820
BF93_09525
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
0.567
map-3
Methionine aminopeptidase; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.
  
     0.513
BF93_02050
DSBA oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.503
arc
ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.450
BF93_06900
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.441
BF93_02040
DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the FPG family.
  
    0.426
Your Current Organism:
Brachybacterium phenoliresistens
NCBI taxonomy Id: 396014
Other names: B. phenoliresistens, BCRC 17589, Brachybacterium phenoliresistens Chou et al. 2007, Brachybacterium sp. phenol-A, JCM 15157, LMG 23707, LMG:23707, strain phenol-A
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