STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BF93_02170Metal-dependent hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (196 aa)    
Predicted Functional Partners:
BF93_01315
Uridylate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.825
BF93_06385
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.625
BF93_02325
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.586
BF93_00265
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.539
BF93_01375
Cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.533
BF93_17670
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.463
BF93_02525
Tetrapyrrole methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.453
BF93_14075
Acetoin utilization protein AcuC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.442
BF93_02190
ATP-dependent DNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
      0.440
BF93_01350
Septum formation inhibitor Maf; Nucleoside triphosphate pyrophosphatase. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.
     
  0.425
Your Current Organism:
Brachybacterium phenoliresistens
NCBI taxonomy Id: 396014
Other names: B. phenoliresistens, BCRC 17589, Brachybacterium phenoliresistens Chou et al. 2007, Brachybacterium sp. phenol-A, JCM 15157, LMG 23707, LMG:23707, strain phenol-A
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