STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BF93_02595Sulfatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (435 aa)    
Predicted Functional Partners:
BF93_09450
Sulfatase modifying factor 1 (C-alpha-formyglycine- generating enzyme 1); Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.839
BF93_09460
Sulfatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.801
BF93_12530
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 
  0.747
BF93_12550
Neuraminidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.746
BF93_04255
beta-N-acetylhexosaminidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.662
BF93_16845
Alpha-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.647
BF93_13390
Alpha-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.638
BF93_03050
2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase; Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin.
     
  0.625
BF93_02600
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.482
BF93_08700
Beta-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.437
Your Current Organism:
Brachybacterium phenoliresistens
NCBI taxonomy Id: 396014
Other names: B. phenoliresistens, BCRC 17589, Brachybacterium phenoliresistens Chou et al. 2007, Brachybacterium sp. phenol-A, JCM 15157, LMG 23707, LMG:23707, strain phenol-A
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