STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BF93_03340Beta-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 3 family. (734 aa)    
Predicted Functional Partners:
BF93_10635
alpha-L-rhamnosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
      0.800
BF93_03335
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.621
BF93_08915
Alpha-amylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.558
BF93_05245
Alpha-glucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 31 family.
    
 0.524
BF93_11310
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
    
 0.472
BF93_03325
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.464
BF93_03330
TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.464
BF93_14780
Alpha-amylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.426
BF93_08920
Alpha-amylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.418
BF93_12495
Alpha-amylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.418
Your Current Organism:
Brachybacterium phenoliresistens
NCBI taxonomy Id: 396014
Other names: B. phenoliresistens, BCRC 17589, Brachybacterium phenoliresistens Chou et al. 2007, Brachybacterium sp. phenol-A, JCM 15157, LMG 23707, LMG:23707, strain phenol-A
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