Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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Textmining
[Homology]
Score
BF93_04200Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (688 aa)    
Predicted Functional Partners:
BF93_04150
GDSL family lipase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.982
BF93_04185
Endopolygalacturonase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 28 family.
  
 0.913
BF93_10150
Lysophospholipase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.854
BF93_04160
Glycoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family.
 
     0.815
BF93_10125
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.812
BF93_10135
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.806
BF93_04180
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.771
BF93_17280
Arabinan endo-1,5-alpha-L-arabinosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.750
BF93_04175
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.747
BF93_08150
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
     0.738
Your Current Organism:
Brachybacterium phenoliresistens
NCBI taxonomy Id: 396014
Other names: B. phenoliresistens, BCRC 17589, Brachybacterium phenoliresistens Chou et al. 2007, Brachybacterium sp. phenol-A, JCM 15157, LMG 23707, LMG:23707, strain phenol-A
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