Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF93_04245Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (659 aa)    
Predicted Functional Partners:
BF93_16605
5'-nucleotidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.744
BF93_13350
Fibronectin; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.685
BF93_14290
Serine protease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S8 family.
  
 0.655
BF93_01175
Cell division protein FtsK; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.641
BF93_18810
Cell division protein FtsK; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.589
BF93_16565
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
 0.581
BF93_01060
Peptidase S41; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.568
BF93_01155
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 0.556
BF93_11565
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.556
BF93_04240
Aminoglycoside phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.547
Your Current Organism:
Brachybacterium phenoliresistens
NCBI taxonomy Id: 396014
Other names: B. phenoliresistens, BCRC 17589, Brachybacterium phenoliresistens Chou et al. 2007, Brachybacterium sp. phenol-A, JCM 15157, LMG 23707, LMG:23707, strain phenol-A
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