STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BF93_04275Carboxypeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (797 aa)    
Predicted Functional Partners:
BF93_02440
Cell division protein DivIVA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.872
BF93_18965
Cell division protein FtsI; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.866
BF93_04270
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.836
BF93_08455
Cell division protein FtsI; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
0.812
BF93_17085
Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.805
BF93_18990
Cell division protein FtsW; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SEDS family.
  
 
 
 0.737
BF93_01780
Metalloendopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.694
murG
UDP-diphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily.
  
  
 0.646
BF93_00025
Metalloendopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.630
whiB-4
WhiB family transcriptional regulator; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
       0.602
Your Current Organism:
Brachybacterium phenoliresistens
NCBI taxonomy Id: 396014
Other names: B. phenoliresistens, BCRC 17589, Brachybacterium phenoliresistens Chou et al. 2007, Brachybacterium sp. phenol-A, JCM 15157, LMG 23707, LMG:23707, strain phenol-A
Server load: low (40%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.