Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
BF93_04585Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (426 aa)    
Predicted Functional Partners:
BF93_09540
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.644
BF93_05205
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.602
BF93_09375
Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.561
BF93_06035
Glycosyl hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.529
BF93_12165
Mandelate racemase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
  
     0.518
BF93_04580
Histidinol phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.485
BF93_09425
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.483
BF93_15585
Sugar phosphate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.479
BF93_08335
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.449
BF93_04085
Carbohydrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.442
Your Current Organism:
Brachybacterium phenoliresistens
NCBI taxonomy Id: 396014
Other names: B. phenoliresistens, BCRC 17589, Brachybacterium phenoliresistens Chou et al. 2007, Brachybacterium sp. phenol-A, JCM 15157, LMG 23707, LMG:23707, strain phenol-A
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