Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
BF93_04855Chromate transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (413 aa)    
Predicted Functional Partners:
BF93_04850
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.723
BF93_04860
3-demethylubiquinone-9 3-methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.651
BF93_04865
Dihydrofolate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.540
BF93_04840
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.446
BF93_04845
MerR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.446
BF93_04870
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.422
BF93_13805
Heme oxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.418
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
     
 0.400
Your Current Organism:
Brachybacterium phenoliresistens
NCBI taxonomy Id: 396014
Other names: B. phenoliresistens, BCRC 17589, Brachybacterium phenoliresistens Chou et al. 2007, Brachybacterium sp. phenol-A, JCM 15157, LMG 23707, LMG:23707, strain phenol-A
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