Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF93_04880MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (469 aa)    
Predicted Functional Partners:
BF93_01035
Multidrug transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.768
BF93_04885
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.655
BF93_04890
Abortive phage infection protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.545
BF93_04875
XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.544
BF93_03525
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.539
BF93_06950
Multidrug transporter CflA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.473
BF93_04895
Pyridine nucleotide-disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.413
BF93_00690
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.403
BF93_05805
Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
   
 
  0.401
Your Current Organism:
Brachybacterium phenoliresistens
NCBI taxonomy Id: 396014
Other names: B. phenoliresistens, BCRC 17589, Brachybacterium phenoliresistens Chou et al. 2007, Brachybacterium sp. phenol-A, JCM 15157, LMG 23707, LMG:23707, strain phenol-A
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