Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BF93_05205Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (232 aa)    
Predicted Functional Partners:
BF93_05210
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.946
BF93_05200
Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.776
BF93_05185
Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.663
BF93_04585
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.602
BF93_05190
ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.602
BF93_05195
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.594
BF93_09540
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.566
BF93_12345
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.531
BF93_13250
ATP-dependent DNA ligase; Catalyzes the ATP-dependent formation of a phosphodiester at the site of a single-strand break in duplex DNA and has been shown to have polymerase activity; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.507
BF93_07015
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.480
Your Current Organism:
Brachybacterium phenoliresistens
NCBI taxonomy Id: 396014
Other names: B. phenoliresistens, BCRC 17589, Brachybacterium phenoliresistens Chou et al. 2007, Brachybacterium sp. phenol-A, JCM 15157, LMG 23707, LMG:23707, strain phenol-A
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