STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BF93_05350Glucuronoxylanase; Derived by automated computational analysis using gene prediction method: Protein Homology. (589 aa)    
Predicted Functional Partners:
BF93_10140
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.695
BF93_16245
Xyloglucanase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.659
BF93_08700
Beta-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.649
BF93_11940
Beta-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 2 family.
    
  0.649
BF93_03815
5-deoxyglucuronate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.621
BF93_17280
Arabinan endo-1,5-alpha-L-arabinosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.621
BF93_03275
1,4-beta-xylanase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.584
BF93_05100
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.574
BF93_04160
Glycoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family.
 
 
 0.565
BF93_05080
Pectate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.555
Your Current Organism:
Brachybacterium phenoliresistens
NCBI taxonomy Id: 396014
Other names: B. phenoliresistens, BCRC 17589, Brachybacterium phenoliresistens Chou et al. 2007, Brachybacterium sp. phenol-A, JCM 15157, LMG 23707, LMG:23707, strain phenol-A
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