STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BF93_05405alpha-L-arabinofuranosidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (770 aa)    
Predicted Functional Partners:
BF93_17280
Arabinan endo-1,5-alpha-L-arabinosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.797
BF93_08150
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
  
  0.762
BF93_11940
Beta-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 2 family.
  
  
  0.716
BF93_04160
Glycoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 43 family.
  
  
  0.694
BF93_02980
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
  
  0.677
araA
Arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
 
 
 0.672
BF93_13360
alpha-N-arabinofuranosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.672
BF93_02610
Xylanase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.650
BF93_13390
Alpha-galactosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.625
BF93_04050
Glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.612
Your Current Organism:
Brachybacterium phenoliresistens
NCBI taxonomy Id: 396014
Other names: B. phenoliresistens, BCRC 17589, Brachybacterium phenoliresistens Chou et al. 2007, Brachybacterium sp. phenol-A, JCM 15157, LMG 23707, LMG:23707, strain phenol-A
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