STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BF93_05455DEAD/DEAH box helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. (852 aa)    
Predicted Functional Partners:
BF93_07200
Preprotein translocase subunit SecG; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family.
  
     0.608
BF93_01870
ATP-dependent helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.552
BF93_05460
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.550
BF93_07055
Signal peptide protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.550
BF93_08020
Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.508
BF93_08470
Signal peptide protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.470
BF93_08475
Signal peptide protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.457
BF93_07465
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.437
BF93_05465
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.403
Your Current Organism:
Brachybacterium phenoliresistens
NCBI taxonomy Id: 396014
Other names: B. phenoliresistens, BCRC 17589, Brachybacterium phenoliresistens Chou et al. 2007, Brachybacterium sp. phenol-A, JCM 15157, LMG 23707, LMG:23707, strain phenol-A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.