STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BF93_05960Phytoene dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (506 aa)    
Predicted Functional Partners:
BF93_15095
Phytoene synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.777
BF93_05965
Pyridine nucleotide-disulfide oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.542
BF93_05970
FAD-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.440
BF93_05975
3-methyladenine DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.440
BF93_15105
Isorenieratene synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.437
BF93_11805
5,10-methylene tetrahydromethanopterin reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.434
BF93_11195
Magnesium chelatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.420
BF93_06325
Delta fatty acid desaturase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.414
Your Current Organism:
Brachybacterium phenoliresistens
NCBI taxonomy Id: 396014
Other names: B. phenoliresistens, BCRC 17589, Brachybacterium phenoliresistens Chou et al. 2007, Brachybacterium sp. phenol-A, JCM 15157, LMG 23707, LMG:23707, strain phenol-A
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