STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BF93_06055Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (423 aa)    
Predicted Functional Partners:
BF93_06085
Competence protein ComEA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.678
BF93_06050
Thymidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.658
whiB-3
Transcriptional regulator; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
   
  
 0.613
BF93_08070
Hemolysin; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.601
BF93_12765
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.597
BF93_09290
23S rRNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.
   
    0.588
BF93_06060
Sugar phosphate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.541
BF93_02305
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
    0.535
BF93_02670
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
    0.535
BF93_05865
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
    0.535
Your Current Organism:
Brachybacterium phenoliresistens
NCBI taxonomy Id: 396014
Other names: B. phenoliresistens, BCRC 17589, Brachybacterium phenoliresistens Chou et al. 2007, Brachybacterium sp. phenol-A, JCM 15157, LMG 23707, LMG:23707, strain phenol-A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.