STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BF93_06220Aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (764 aa)    
Predicted Functional Partners:
tam
Trans-aconitate methyltransferase; Catalyzes the S-adenosylmethionine monomethyl esterification of trans-aconitate.
       0.675
BF93_06215
LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family.
       0.550
BF93_11960
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
    
  0.528
BF93_01315
Uridylate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
  0.484
BF93_02800
Glucose dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.483
recO
DNA recombination protein RecO; Involved in DNA repair and RecF pathway recombination.
       0.460
BF93_13600
Cardiolipin synthase; Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol; Belongs to the phospholipase D family. Cardiolipin synthase subfamily.
    
  0.453
BF93_00045
Trehalose phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.410
BF93_06810
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.409
BF93_06210
Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.403
Your Current Organism:
Brachybacterium phenoliresistens
NCBI taxonomy Id: 396014
Other names: B. phenoliresistens, BCRC 17589, Brachybacterium phenoliresistens Chou et al. 2007, Brachybacterium sp. phenol-A, JCM 15157, LMG 23707, LMG:23707, strain phenol-A
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