Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BF93_06325Delta fatty acid desaturase; Derived by automated computational analysis using gene prediction method: Protein Homology. (369 aa)    
Predicted Functional Partners:
BF93_12225
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.602
BF93_18490
Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.585
BF93_15130
Cytochrome P450; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cytochrome P450 family.
    
 0.533
BF93_15105
Isorenieratene synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.524
BF93_06330
Amidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.518
BF93_14575
Glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.474
BF93_08350
FAD-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.436
BF93_05960
Phytoene dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.415
BF93_15100
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.415
BF93_03575
3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.407
Your Current Organism:
Brachybacterium phenoliresistens
NCBI taxonomy Id: 396014
Other names: B. phenoliresistens, BCRC 17589, Brachybacterium phenoliresistens Chou et al. 2007, Brachybacterium sp. phenol-A, JCM 15157, LMG 23707, LMG:23707, strain phenol-A
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