STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BF93_06340Osmotically inducible protein C; Derived by automated computational analysis using gene prediction method: Protein Homology. (168 aa)    
Predicted Functional Partners:
def-2
Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.
 
     0.800
BF93_03090
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.581
BF93_13525
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.579
BF93_18830
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.547
BF93_06350
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.545
BF93_13770
23S rRNA pseudouridylate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.446
BF93_01485
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.434
BF93_13515
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.432
BF93_06330
Amidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.425
Your Current Organism:
Brachybacterium phenoliresistens
NCBI taxonomy Id: 396014
Other names: B. phenoliresistens, BCRC 17589, Brachybacterium phenoliresistens Chou et al. 2007, Brachybacterium sp. phenol-A, JCM 15157, LMG 23707, LMG:23707, strain phenol-A
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