Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-expression
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[Homology]
Score
BF93_06900Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (314 aa)    
Predicted Functional Partners:
BF93_06905
DNA repair protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.991
dnaE2
DNA polymerase; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase.
 
  
 0.963
dinB
DNA repair nucleotidyltransferase; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII.
  
  
 0.714
BF93_08050
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.502
BF93_12765
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.495
BF93_04750
HNH endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.474
BF93_16060
HNH endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.456
BF93_05840
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.455
BF93_02055
Multidrug ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.441
BF93_08545
HNH endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.436
Your Current Organism:
Brachybacterium phenoliresistens
NCBI taxonomy Id: 396014
Other names: B. phenoliresistens, BCRC 17589, Brachybacterium phenoliresistens Chou et al. 2007, Brachybacterium sp. phenol-A, JCM 15157, LMG 23707, LMG:23707, strain phenol-A
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