Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ctaBProtoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. (318 aa)    
Predicted Functional Partners:
BF93_07740
Cytochrome B561; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.997
BF93_07785
Cytochrome C oxidase subunit II; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.996
BF93_07535
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.995
BF93_07770
Membrane protein; Part of cytochrome c oxidase, its function is unknown. Belongs to the cytochrome c oxidase bacterial subunit CtaF family.
  
  
 0.922
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
  
  
 0.887
BF93_07755
Ubiquinol-cytochrome c reductase cytochrome b subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.828
BF93_07745
Cystathionine beta-lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.805
BF93_08580
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.765
BF93_13805
Heme oxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.765
BF93_06745
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.752
Your Current Organism:
Brachybacterium phenoliresistens
NCBI taxonomy Id: 396014
Other names: B. phenoliresistens, BCRC 17589, Brachybacterium phenoliresistens Chou et al. 2007, Brachybacterium sp. phenol-A, JCM 15157, LMG 23707, LMG:23707, strain phenol-A
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