STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BF93_07585Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (245 aa)    
Predicted Functional Partners:
BF93_07575
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.875
BF93_07580
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.836
BF93_07590
Deoxyuridine 5'-triphosphate nucleotidohydrolase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA.
       0.836
BF93_07600
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.775
BF93_06475
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.756
rbpA
Electron transporter; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters.
  
     0.746
BF93_07805
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.744
BF93_07830
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.742
BF93_07045
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.674
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
     0.674
Your Current Organism:
Brachybacterium phenoliresistens
NCBI taxonomy Id: 396014
Other names: B. phenoliresistens, BCRC 17589, Brachybacterium phenoliresistens Chou et al. 2007, Brachybacterium sp. phenol-A, JCM 15157, LMG 23707, LMG:23707, strain phenol-A
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.