STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BF93_08330P-aminobenzoyl-glutamate transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (526 aa)    
Predicted Functional Partners:
BF93_08325
Peptidase M20; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase M20A family.
  
 0.944
BF93_18445
Sodium:proton antiporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.
  
     0.591
BF93_08335
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.554
BF93_08340
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.504
BF93_08345
LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.504
BF93_08350
FAD-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.495
BF93_12365
Metal-dependent amidase/aminoacylase/carboxypeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.432
BF93_08320
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.407
Your Current Organism:
Brachybacterium phenoliresistens
NCBI taxonomy Id: 396014
Other names: B. phenoliresistens, BCRC 17589, Brachybacterium phenoliresistens Chou et al. 2007, Brachybacterium sp. phenol-A, JCM 15157, LMG 23707, LMG:23707, strain phenol-A
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